Abstract. Abstract Aim The aim of this study was to evaluate how phytoplankton community diversity, dominance, and rarity are influenced by different local environmental conditions in urban lakes. We expect that richness will be negatively influenced in lakes with higher nutrient concentrations and high turbidity, while abundance will be positively influenced. Thus, lakes with these conditions will have greater dominance of a few species and lower rarity, and the opposite in lakes with lower nutrient concentrations and less turbidity. Methods Phytoplankton and abiotic variables samples were collected in fourteen lakes distributed in the municipality of Goiânia, Goiás, Brazil, during a rainy period. Results It was possible to identify an environmental heterogeneity among the lakes. We identified a separation of the lakes according to phytoplankton richness and density, especially due to the contribution of green algae, desmids, and cyanobacteria. Most lakes showed high diversity and evenness values, with a predominance of rare taxa and few dominant species. The main variables associated with phytoplankton were water temperature, dissolved oxygen, turbidity, and nutrient concentrations. Conclusions Therefore, the study of species diversity, dominance, and rarity based on phytoplankton richness and abundance and their relationship with different local environmental conditions can be an important model for assessing water quality in urban lakes.